Článek

BERÁNEK, Jakub, Ada BÖHM, Gianluca PALERMO, Jan MARTINOVIČ a Branislav JANSÍK. HyperQueue: Efficient and ergonomic task graphs on HPC clusters. SoftwareX. Elsevier, 2024, 27(September), s. 1-6. ISSN 2352-7110. [Detail]
VAVRA, Ondrej, Jakub BERÁNEK, Jan STOURAC, Martin ŠURKOVSKÝ, Jiri FILIPOVIC, Jiri DAMBORSKY, Jan MARTINOVIČ a David BEDNAR. pyCaverDock: Python implementation of the popular tool for analysis of ligand transport with advanced caching and batch calculation support. Bioinformatics. Oxford: Oxford University Press, 2023, 39(8), s. nestránkováno. ISSN 1367-4803. [Detail]
BERÁNEK, Jakub, Stanislav BÖHM a Vojtěch CIMA. Analysis of workflow schedulers in simulated distributed environments. Journal of Supercomputing. Springer, 2022, 78(13), s. 15154-15180. ISSN 0920-8542. [Detail]

Příspěvek ve sborníku

PILATO, Christian, Subhadeep BANIK, Jakub BERÁNEK, Fabien BROCHETON, Jeronimo CASTRILLON, Riccardo CEVASCO, Radim CMAR, Serena CURZEL, Fabrizio FERRANDI, Karl F.A. FRIEBEL, Antonella GALIZIA, Matteo GRASSO, Paulo Miguel GUIMARÃES DA SILVA, Jan MARTINOVIČ, Gianluca PALERMO, Michele PAOLINO, Andrea PARODI, Antonio PARODI, Fabio PINTUS, Raphael POLIG, David POULET, Francesco REGAZZONI, Burkhard RINGLEIN, Roberto ROCCO, Kateřina SLANINOVÁ, Tom SLOOFF, Stephanie SOLDAVINI, Felix SUCHERT, Mattia TIBALDI, Beat WEISS a Christoph HAGLEITNER. A System Development Kit for Big Data Applications on FPGA-based Clusters: The EVEREST Approach. In: 2024 Design, Automation & Test in Europe Conference & Exhibition (DATE) : proceedings : 25 - 27 March 2024, Valencia, Spain. Piscataway: IEEE, 2024. s. nestránkováno. ISBN 979-8-3503-4859-0. [Detail]
PALERMO, G., G. ACCORDI, D. GADIOLI, Y. ZHANG, E. VITALI, B. GUINDANI, D. ARDAGNA, C. SILVANO, A. R. BECCARI, D. BONANNI, C. TALARICO, F. LUGHINI, A. D. BISWAS, Jan MARTINOVIČ, Martin GOLASOWSKI, Paulo Miguel GUIMARÃES DA SILVA, Ada BÖHM, Jakub BERÁNEK, Jan KŘENEK, Branislav JANSÍK, P. THOMAN, P. SALZMANN, T. FAHRINGER, T. SCHWEDE, L. T. ALEXANDER, G. TAURIELLO, J. DURAIRAJ, B. COSENZA, L. CRISCI, A. EMERSON, F. FICARELLI, E. LINDAHL, S. WINGBERMÜHLE, D. GREGORI, S. COLETTI, E. SANA a P. GSCHWANDTNER. LIGATE-LIgand Generator and portable drug discovery platform at Exascale. In: Proceedings of the 21st ACM International Conference on Computing Frontiers 2024 Workshops and Special Sessions, CF 2024 Companion. New York: Association for Computing Machinery, 2024. s. 107-109. ISBN 979-8-4007-0492-5. [Detail]
PALERMO, G., G. ACCORDI, D. GADIOLI, E. VITALI, C. SILVANO, B. GUINDANI, D. ARDAGNA, A. R. BECCARI, D. BONANNI, C. TALARICO, F. LUGHINI, Jan MARTINOVIČ, Paulo Miguel GUIMARÃES DA SILVA, Ada BÖHM, Jakub BERÁNEK, Jan KŘENEK, Branislav JANSÍK, B. COSENZA, L. CRISCI, P. THOMAN, P. SALZMANN, T. FAHRINGER, L. T. ALEXANDER, G. TAURIELLO, T. SCHWEDE, J. DURAIRAJ, A. EMERSON, F. FICARELLI, S. WINGBERMÜHLE, E. LINDHAL, D. GREGORI, E. SANA, S. COLETTI a P. GSCHWANDTNER. Tunable and Portable Extreme-Scale Drug Discovery Platform at Exascale: the LIGATE Approach. In: Proceedings of the 20th ACM International Conference on Computing Frontiers 2023, CF 2023 : May 9 - May 11, 2023 : Bologna, Italy. New York: ACM, 2023. s. 272-278. ISBN 979-8-4007-0140-5. [Detail]
BESTA, Maciej, Raghavendra KANAKAGIRI, Grzegorz KWASNIEWSKI, Rachata AUSAVARUNGNIRUN, Jakub BERÁNEK, Konstantinos KANELLOPOULOS, Kacper JANDA, Zur VONARBURG-SHMARIA, Lukas GIANINAZZI, Ioana STEFAN, Juan Goméz LUNA, Marcin COPIK, Lukas KAPP-SCHWOERER, Salvatore DI GIROLAMO, Marek KONIECZNY, Onur MUTLU a Torsten HOEFLER. SISA: Set-Centric Instruction Set Architecture for Graph Mining on Processing-in-Memory Systems. In: MICRO 2021 : 54th IEEE/ACM International Symposium on Microarchitecture : October 18-22, 2021. Piscataway: IEEE, 2021. s. 282-297. ISBN 978-1-4503-8557-2. [Detail]
DI GIROLAMO, Salvatore, Andreas KURTH, Alexandru CALOTOIU, Thomas BENZ, Timo SCHNEIDER, Jakub BERÁNEK, Luca BENINI a Torsten HOEFLER. A RISC-V in-network accelerator for flexible high-performance low-power packet processing. In: Proceedings - International Symposium on Computer Architecture : June 2021. Piscataway: IEEE, 2021. s. 958-971. ISBN 978-1-66543-333-4. [Detail]
BESTA, Maciej, Zur VONARBURG-SHMARIA, Schaffner YANNICK, Schwarz LEONARDO, Kwasniewski GRZEGORZ, Gianinazzi LUKAS, Jakub BERÁNEK, Janda KACPER, Holenstein TOBIAS, Leisinger SEBASTIAN, Tatkowski PETER, Ozdemir ESREF, Balla ADRIAN, Copik MARCIN, Lindenberger PHILIPP, Kalvoda PAVEL, Konieczny MAREK, Mutlu ONUR a Hoefler TORSTEN. Graphminesuite: Enabling high-performance and programmable graph mining algorithms with set algebra. In: Proceedings of the VLDB Endowment. Volume 14. New York: Association for Computing Machinery, 2021. s. 1922 - 1936. ISBN 0-000-00000-0. [Detail]
GOLASOWSKI, Martin, Jakub BERÁNEK, Martin ŠURKOVSKÝ, Lukáš RAPANT, Daniela SZTURCOVÁ, Jan MARTINOVIČ a Kateřina SLANINOVÁ. Alternative paths reordering using probabilistic time-dependent routing. In: Advances in Intelligent Systems and Computing. Volume 993. Cham: Springer, 2020. s. 235-246. ISBN 978-3-030-22353-3. [Detail]
MARTINOVIČ, Jan, Martin GOLASOWSKI, Kateřina SLANINOVÁ, Jakub BERÁNEK, Martin ŠURKOVSKÝ, Lukáš RAPANT, Daniela SZTURCOVÁ a R. CMAR. A Distributed Environment for Traffic Navigation Systems. In: Advances in Intelligent Systems and Computing. Volume 993. Cham: Springer, 2020. s. 294-304. ISBN 978-3-030-22353-3. [Detail]
BÖHM, Stanislav a Jakub BERÁNEK. Runtime vs Scheduler: Analyzing Dask's Overheads. In: Proceedings of 15th Workshop on Workflows in Support of Large-Scale Science, WORKS 2020 : November 2020. Piscataway: IEEE - Institute of Electrical and Electronics Engineers, 2020. s. 1-8. ISBN 978-0-7381-1040-0. [Detail]
DE MATTEIS, Tiziano, Johannes DE FINE LICHT, Jakub BERÁNEK a Hoefler TORSTEN. Streaming Message Interface: High-Performance Distributed Memory Programming on Reconfigurable Hardware. In: International Conference for High Performance Computing, Networking, Storage and Analysis, SC. Piscataway: IEEE, 2019. s. nestránkováno. ISBN 978-1-4503-6229-0. [Detail]
DI GIROLAMO, Salvatore, Konstantin TARANOV, Andreas KURTH, Michael SCHAFFNER, Timo SCHNEIDER, Jakub BERÁNEK, Maciej BESTA, Luca BENINI, Duncan ROWETH a Torsten HOEFLER. Network-accelerated non-contiguous memory transfers. In: International Conference for High Performance Computing, Networking, Storage and Analysis, SC. Piscataway: IEEE, 2019. s. nestránkováno. ISBN 978-1-4503-6229-0. [Detail]

Software

BERÁNEK, Jakub a Ada BÖHM. HyperQueue v0.20.0. VŠB - Technická univerzita Ostrava, 2024. [Detail]
ŠURKOVSKÝ, Martin, Kateřina SLANINOVÁ, Jan MARTINOVIČ a Jakub BERÁNEK. Deterministický simulátor dopravního toku. VŠB - Technical University of Ostrava, 2022. [Detail]
BÖHM, Stanislav, Jakub BERÁNEK, Vojtěch CIMA, Jan MARTINOVIČ a Branislav JANSÍK. HyperQueue. IT4Innovations národní superpočítačové centrum, Vysoká škola báňská – Technická univerzita Ostrava, 2021. [Detail]
ŠURKOVSKÝ, Martin, Jakub BERÁNEK, Ondřej VÁVRA, Jan ŠTOURAČ a Jiří DAMBORSKÝ. Python API CaverDock. VŠB - TU Ostrava, 2021. [Detail]
BÖHM, Stanislav, Jakub BERÁNEK a Vojtěch CIMA. Estee. Vysoká škola báňská - Technická univerzita Ostrava, 2020. [Detail]
BÖHM, Stanislav a Jakub BERÁNEK. RSDS. Vysoká škola báňská - Technická univerzita Ostrava, 2020. [Detail]
BÖHM, Stanislav a Jakub BERÁNEK. Snailwatch. Vysoká škola báňská - Technická univerzita Ostrava, 2018. [Detail]

Ostatní

VYSOCKÝ, Ondřej, Jakub BERÁNEK, Ondřej MECA, Jakub HOMOLA a Radim VAVŘÍK. Introduction to HPC. 2024. [Detail]
VYSOCKÝ, Ondřej, Jakub BERÁNEK, Ondřej MECA a Radim VAVŘÍK. Introduction to HPC. 2022. [Detail]
BÖHM, Stanislav, Jakub BERÁNEK, Vojtěch CIMA a Alfréd KOČÍ. Detekce plevele – plečkovací stroj. 2021. [Detail]
BÖHM, Ada, Jakub BERÁNEK, Vojtěch CIMA, Roman MACHÁČEK, Vyomkesh Kumar JHA, Alfréd KOČÍ, Branislav JANSÍK a Jan MARTINOVIČ. HyperQueue: overcoming limitations of HPC job managers. 2021. [Detail]
BESEDA, Martin, Jakub BERÁNEK, Ondřej MECA, Radim VAVŘÍK a Ondřej VYSOCKÝ. Introduction to High Performance Computing for IMTM/UPOL (IT4I training). 2020. [Detail]