Článek

WIESNER, David; SUK, Julian; DUMMER, Sven; NEČASOVÁ, Tereza; ULMAN, Vladimír; SVOBODA, David a WOLTERINK, Jelmer M.. Generative modeling of living cells with SO(3)-equivariant implicit neural representations. Online. Medical Image Analysis. 2024, roč. 91, č. January. ISSN 1361-8415. Dostupné z: https://cbia.fi.muni.cz/research/simulations/implicit_shapes.
Detail
MAŠKA, Martin; ULMAN, Vladimír; DELGADO-RODRIGUEZ, Pablo; GÓMEZ-DE-MARISCAL, Estibaliz; NEČASOVÁ, Tereza; GUERRERO PEÑA, Fidel A.; REN, Tsang Ing; MEYEROWITZ, Elliot M.; SCHERR, Tim; LÖFFLER, Katharina; MIKUT, Ralf; GUO, Tianqi; WANG, Yin; ALLEBACH, Jan P.; BAO, Rina; AL-SHAKARJI, Noor M.; RAHMON, Gani; TOUBAL, Imad Eddine; PALANIAPPAN, Kannappan; LUX, Filip; MATULA, Petr; SUGAWARA, Ko; MAGNUSSON, Klass E.G.; AHO, Layton; COHEN, Andrew R.; ARBELLE, Assaf; BEN-HAIM, Tal; RAVIV, Tammy Riklin; ISENSEE, Fabian; JÄGER, Paul F.; MAIER-HEIN, Klaus H.; YANMING, Zhu; EDERRA, Cristina; URBIOLA, Ainhoa; MEIJERING, Erik; CUNHA, Alexandre; MUÑOZ-BARRUTIA, Arrate; KOZUBEK, Michal a ORTIZ-DE-SOLÓRZANO, Carlos. The Cell Tracking Challenge: 10 years of objective benchmarking. Online. Nature Methods. 2023, roč. 20, č. 7, s. 1010-1020. ISSN 1548-7091. Dostupné z: https://www.nature.com/articles/s41592-023-01879-y.
Detail
JAIN, Akanksha; ULMAN, Vladimír; MUKHERJEE, Arghyadip; PRAKASH, Mangal; CUENCA, Marina; PIMPALE, Lokesh; MÜNSTER, Stefan; HAASE, Robert; PANFILIO, Kristen; JUG, Florian; GRILL, Stephan; TOMANČÁK, Pavel a PAVLOPOULOS, Anastasios. Regionalized tissue fluidization is required for epithelial gap closure during insect gastrulation. Online. Nature Communications. 2020, roč. 11, č. 5604, s. 1-13. ISSN 2041-1723. Dostupné z: https://www.nature.com/articles/s41467-020-19356-x.
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Kapitola v knize

JAIN, Akanksha; ULMAN, Vladimír; KRUMNIKL, Michal; PIETZSCH, Tobias; PREBISCH, Stephan a TOMANČÁK, Pavel. Image Processing and Analysis of Light Sheet Microscopy Data. In: Light Sheet Fluorescence Microscopy. Weinheim: Wiley-VCH, 2024. s. 203-230. ISBN 978-3-527-34135-1.
Detail
ULMAN, Vladimír a WIESNER, David. Review of cell image synthesis for image processing. In: Biomedical Image Synthesis and Simulation. Londýn: Academic Press, an imprint of Elsevier, 2022. s. 447-489. ISBN 978-0-12-824349-7.
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Příspěvek ve sborníku

KAISER, Timo; ULMAN, Vladimír a ROSENHAHN, Bodo. CHOTA: A Higher Order Accuracy Metric for Cell Tracking. In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Volume 15638. 2025. s. 122-138. ISBN 978-3-031-91720-2.
Detail

Software

KOŽUSZNIK, Jan; VELISSARIOU, Dimitrios Stefanos; KRUMNIKL, Michal; TRNKA, Daniel; BAINAR, Petr; MORAVEC, Pavel; TOMANČÁK, Pavel a ULMAN, Vladimír. HPC Workflow Manager. 2021.
Detail